Plots the output of runExperiment.

It takes the output of runExperiment, and generates plots of ecological memory patterns for a large number of simulated pollen curves.

plotExperiment(
 experiment.output = NULL,
 parameters.file = NULL,
 experiment.title = NULL,
 sampling.names = NULL,
 legend.position = "bottom",
 R2 = NULL,
 filename = NULL,
 strip.text.size = 12,
 axis.x.text.size = 8,
 axis.y.text.size = 12,
 axis.x.title.size = 14,
 axis.y.title.size = 14,
 title.size = 18,
 caption = ""
 )

Arguments

experiment.output	list, output of runExperiment.
parameters.file	dataframe of simulation parameters.
experiment.title	character string, title of the plot.
sampling.names	vector of character strings with the names of the columns used in the argument simulations.file of runExperiment. If NULL, no pdf plot is produced.
legend.position	legend position in ggplot object. One of "bottom", "right", "none".
R2	boolean. If TRUE, pseudo R-squared values are printed along with the traits of the virtual taxa.
filename	character string, path and name (without extension) of the output pdf file.
strip.text.size	size of the facet's labels.
axis.x.text.size	size of the labels in x axis.
axis.y.text.size	size of the labels in y axis.
axis.x.title.size	size of the title of the x axis.
axis.y.title.size	size of the title of the y axis.
title.size	size of the plot title.
caption	character string, caption of the output figure.

Value

A ggplot2 object.

See also

plotMemory, runExperiment